Publications

2018

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H. Shim / F. G. van der Goot Grunberg (Dir.) : Likelihood-free Inference of Population Genetic Parameters from Time-Sampled Genetic Data. Lausanne, EPFL, 2018. DOI : 10.5075/epfl-thesis-7605.
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B. M. Spinelli / P. Thiran; L. E. Celis (Dir.) : Localizing the Source of an Epidemic Using Few Observations. Lausanne, EPFL, 2018. DOI : 10.5075/epfl-thesis-8391.
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F. J. Perez Saez / A. Rinaldo (Dir.) : A field-based modelling framework of the ecohydrology of schistosomiasis. Lausanne, EPFL, 2018. DOI : 10.5075/epfl-thesis-8239.

2017

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A. D. Pananos; T. M. Bury; C. Wang; J. Schonfeld; S. P. Mohanty et al. : Critical dynamics in population vaccinating behavior; Proceedings Of The National Academy Of Sciences Of The United States Of America. 2017. DOI : 10.1073/pnas.1704093114.
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B. Roche; B. Gaillard; L. Leger; R. Pelagie-Moutenda; T. Sochacki et al. : An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique; Scientific Reports. 2017. DOI : 10.1038/s41598-017-05957-y.
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A. Flahault; A. Geissbuhler; I. Guessous; P. J. Guerin; I. Bolon et al. : Precision global health in the digital age; Swiss Medical Weekly. 2017. DOI : 10.4414/smw.2017.14423.
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F. Finger / A. Rinaldo; E. Bertuzzo (Dir.) : Spatially explicit modeling of cholera epidemics. Lausanne, EPFL, 2017. DOI : 10.5075/epfl-thesis-7565.

2016

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M. Salathe : Digital Pharmacovigilance and Disease Surveillance: Combining Traditional and Big-Data Systems for Better Public Health; Journal Of Infectious Diseases. 2016. DOI : 10.1093/infdis/jiw281.
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Z. Wang; C. T. Bauch; S. Bhattacharyya; A. D'Onofrio; P. Manfredi et al. : Statistical physics of vaccination; Physics Reports-Review Section Of Physics Letters. 2016. DOI : 10.1016/j.physrep.2016.10.006.
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S. P. Mohanty; D. P. Hughes; M. Salathe : Using Deep Learning for Image-Based Plant Disease Detection; Frontiers In Plant Science. 2016. DOI : 10.3389/fpls.2016.01419.
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X. Sun; Z. Lu; X. Zhang; M. Salathe; G. Cao : Infectious Disease Containment Based on a Wireless Sensor System; Ieee Access. 2016. DOI : 10.1109/Access.2016.2551199.

2015

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E. Vayena; M. Salathé; L. C. Madoff; J. S. Brownstein : Ethical challenges of big data in public health; PLoS computational biology. 2015. DOI : 10.1371/journal.pcbi.1003904.
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C. L. Althaus; M. Salathé : Measles Vaccination Coverage and Cases among Vaccinated Persons; Emerging infectious diseases. 2015. DOI : 10.3201/eid2108.150284.
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S. Xiao; L. Zongqing; Z. Xiaomei; M. Salathé; C. Guohong : Targeted vaccination based on a wireless sensor system. 2015. Thirteenth IEEE International Conference on Pervasive Computing and Communications, St. Louis, Missouri, USA, March 23-27, 2015. p. 215 - 220. DOI : 10.1109/PERCOM.2015.7146531.
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S. Tuarob; C. Tucker; M. Salathé; N. Ram : Modeling Individual-Level Infection Dynamics Using Social Network Information. 2015. The 24th ACM International Conference on Information and Knowledge Management, Melbourne, Australia, October 19-23, 2015. p. 1501-1510. DOI : 10.1145/2806416.2806575.
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C. Adrover; T. Bodnar; Z. Huang; A. Telenti; M. Salathé : Identifying Adverse Effects of HIV Drug Treatment and Associated Sentiments Using Twitter; JMIR Public Health and Surveillance. 2015. DOI : 10.2196/publichealth.4488.

2014

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S. Tuarob; C. S. Tucker; M. Salathe; N. Ram : An ensemble heterogeneous classification methodology for discovering health-related knowledge in social media messages; Journal of biomedical informatics. 2014. DOI : 10.1016/j.jbi.2014.03.005.
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V. C. Barclay; T. Smieszek; J. He; G. Cao; J. J. Rainey et al. : Positive network assortativity of influenza vaccination at a high school: implications for outbreak risk and herd immunity; PloS one. 2014. DOI : 10.1371/journal.pone.0087042.
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T. Smieszek; V. C. Barclay; I. Seeni; J. J. Rainey; H. Gao et al. : How should social mixing be measured: comparing web-based survey and sensor-based methods; BMC infectious diseases. 2014. DOI : 10.1186/1471-2334-14-136.
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P. Yin; N. Ram; W.-C. Lee; C. Tucker; S. Khandelwal et al. : Two Sides of a Coin: Separating Personal Communication and Public Dissemination Accounts in Twitter. 2014. 18th Pacific-Asia Conference, PAKDD 2014, Tainan, Taiwan, May 13-16, 2014. p. 163-175. DOI : 10.1007/978-3-319-06608-0_14.
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T. Bodnar; V. Barclay; N. Ram; C. Tucker; M. Salathé : On the ground validation of online diagnosis with Twitter and medical records. 2014. 23rd International World Wide Web Conference, Seoul, Korea, April 7-11, 2014. p. 651-656. DOI : 10.1145/2567948.2579272.
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C. Adrover; T. Bodnar; M. Salathé : Targeting HIV-related Medication Side Effects and Sentiment Using Twitter Data; arXiv. 2014.

2013

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M. Salathé; C. C. Freifeld; S. R. Mekaru; A. F. Tomasulo; J. S. Brownstein : Influenza A (H7N9) and the importance of digital epidemiology; The New England journal of medicine. 2013. DOI : 10.1056/NEJMp1307752.
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M. Salathé; D. Vu; S. Khandelwal; D. Hunter : The dynamics of health behavior sentiments on a large online social network; EPJ Data Science. 2013. DOI : 10.1140/epjds16.
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T. Bodnar; M. Salathé : Validating models for disease detection using twitter. 2013. 22nd International World Wide Web Conference (WWW 2013), Rio de Janeiro, Brazil, May 13 - 17, 2013. p. 699-702.
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E. Campbell; M. Salathé : Complex social contagion makes networks more vulnerable to disease outbreaks; Scientific reports. 2013. DOI : 10.1038/srep01905.
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T. Smieszek; M. Salathé : A low-cost method to assess the epidemiological importance of individuals in controlling infectious disease outbreaks; BMC medicine. 2013. DOI : 10.1186/1741-7015-11-35.
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S. Tuarob; C. Tucker; M. Salathé; N. Ram : Discovering health-related knowledge in social media using ensembles of heterogeneous features. 2013. 22nd ACM international conference on Information & Knowledge Management (CIKM 2013), San Francisco, CA, USA, October 27 - November 01, 2013. p. 1685-1690. DOI : 10.1145/2505515.2505629.
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Z. Huang; U. Kumar; T. Bodnar; M. Salathé : Understanding population displacements on location-based call records using road data. 2013. 21st ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL GIS 2013), Orlando, Florida, USA, November 5-8, 2013. p. 17-21.
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H. Xia; J. Chen; M. Marathe; H. Mortveit; M. Salathé : Synthesizing Social Proximity Networks by Combining Subjective Surveys with Digital Traces. 2013. IEEE 16th International Conference on Computational Science and Engineering (CSE), Sydney, Australia, December 03-05, 2013. p. 188-195. DOI : 10.1109/CSE.2013.38.
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T. Bodnar; M. Salathé : The Social Maintenance of Cooperation through Hypocrisy; arXiv. 2013.

2012

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M. Salathé; L. Bengtsson; T. J. Bodnar; D. D. Brewer; J. S. Brownstein et al. : Digital epidemiology; PLoS computational biology. 2012. DOI : 10.1371/journal.pcbi.1002616.
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R. Mostowy; J. Engelstädter; M. Salathé : Non-genetic inheritance and the patterns of antagonistic coevolution; BMC evolutionary biology. 2012. DOI : 10.1186/1471-2148-12-93.
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T. Bodnar; M. Salathé : Governing the global commons with local institutions; PloS one. 2012. DOI : 10.1371/journal.pone.0034051.

2011

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M. Salathé; S. Khandelwal : Assessing vaccination sentiments with online social media: implications for infectious disease dynamics and control; PLoS computational biology. 2011. DOI : 10.1371/journal.pcbi.1002199.
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J. Jones; M. Salathé; M. Feldman; M. Kazandjieva; J. Lee et al. : Measuring school contact networks using wireless sensor technology. 2011. 36th Annual Meeting: Human Biology Association, Minneapolis, Minesota, USA, April 13-14, 2011. p. 263. DOI : 10.1002/ajhb.21153.

2010

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S. Funk; M. Salathé; V. A. A. Jansen : Modelling the influence of human behaviour on the spread of infectious diseases: a review; Journal of the Royal Society, Interface / the Royal Society. 2010. DOI : 10.1098/rsif.2010.0142.
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M. Salathé; M. Kazandjieva; J. W. Lee; P. Levis; M. W. Feldman et al. : A high-resolution human contact network for infectious disease transmission; Proceedings of the National Academy of Sciences of the United States of America. 2010. DOI : 10.1073/pnas.1009094108.
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M. Salathé; J. H. Jones : Dynamics and control of diseases in networks with community structure; PLoS computational biology. 2010. DOI : 10.1371/journal.pcbi.1000736.
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D. J. Salkeld; M. Salathé; P. Stapp; J. H. Jones : Plague outbreaks in prairie dog populations explained by percolation thresholds of alternate host abundance; Proceedings of the National Academy of Sciences of the United States of America. 2010. DOI : 10.1073/pnas.1002826107.
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M. Kazandjieva; J. Lee; M. Salathé; M. Feldman; J. Jones et al. : Experiences in measuring a human contact network for epidemiology research. 2010. 6th Workshop on Hot Topics in Embedded Networked Sensors (HotEMNETS'10), Killarney, Ireland, June 28-29, 2010. p. 7. DOI : 10.1145/1978642.1978651.
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R. Mostowy; M. Salathé; R. D. Kouyos; S. Bonhoeffer : On the evolution of sexual reproduction in hosts coevolving with multiple parasites; Evolution; international journal of organic evolution. 2010. DOI : 10.1111/j.1558-5646.2010.00951.x.

2009

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J. H. Jones; M. Salathé : Early assessment of anxiety and behavioral response to novel swine-origin influenza A(H1N1); PloS one. 2009. DOI : 10.1371/journal.pone.0008032.
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M. Salathé; J. Van Cleve; M. W. Feldman : Evolution of stochastic switching rates in asymmetric fitness landscapes; Genetics. 2009. DOI : 10.1534/genetics.109.103333.
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M. Salathé; R. D. Kouyos; S. Bonhoeffer : On the causes of selection for recombination underlying the red queen hypothesis; The American naturalist. 2009. DOI : 10.1086/599085.
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R. D. Kouyos; M. Salathé; S. P. Otto; S. Bonhoeffer : The role of epistasis on the evolution of recombination in host-parasite coevolution; Theoretical population biology. 2009. DOI : 10.1016/j.tpb.2008.09.007.

2008

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M. Salathé; R. D. Kouyos; S. Bonhoeffer : The state of affairs in the kingdom of the Red Queen; Trends in ecology & evolution. 2008. DOI : 10.1016/j.tree.2008.04.010.
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M. Salathé; S. Bonhoeffer : The effect of opinion clustering on disease outbreaks; Journal of the Royal Society, Interface / the Royal Society. 2008. DOI : 10.1098/rsif.2008.0271.
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M. Salathé; R. D. Kouyos; R. R. Regoes; S. Bonhoeffer : Rapid parasite adaptation drives selection for high recombination rates; Evolution; international journal of organic evolution. 2008. DOI : 10.1111/j.1558-5646.2007.00265.x.
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M. Salathé; O. S. Soyer : Parasites lead to evolution of robustness against gene loss in host signaling networks; Molecular systems biology. 2008. DOI : 10.1038/msb.2008.44.

2007

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R. D. Kouyos; M. Salathé; S. Bonhoeffer : The Red Queen and the persistence of linkage-disequilibrium oscillations in finite and infinite populations; BMC evolutionary biology. 2007. DOI : 10.1186/1471-2148-7-211.
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M. Salathé / S. Bonhoeffer (Dir.) : The evolution of complexity on the level of genes, individuals and populations. Ecole Polytechnique Fédérale de Zürich (ETHZ), 2007. DOI : 10.3929/ethz-a-005364513.

2006

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O. S. Soyer; M. Salathé; S. Bonhoeffer : Signal transduction networks: topology, response and biochemical processes; Journal of theoretical biology. 2006. DOI : 10.1016/j.jtbi.2005.05.030.
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M. Salathé; M. Ackermann; S. Bonhoeffer : The effect of multifunctionality on the rate of evolution in yeast; Molecular biology and evolution. 2006. DOI : 10.1093/molbev/msj086.
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M. Salathé; R. Salathé; P. Schmid-Hempel; S. Bonhoeffer : Mutation accumulation in space and the maintenance of sexual reproduction; Ecology letters. 2006. DOI : 10.1111/j.1461-0248.2006.00942.x.
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A. Scherer; M. Salathé; S. Bonhoeffer : High epitope expression levels increase competition between T cells; PLoS computational biology. 2006. DOI : 10.1371/journal.pcbi.0020109.
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M. Salathé : Sexual selection and its effect on the fixation of an asexual clone; Biology letters. 2006. DOI : 10.1098/rsbl.2006.0529.

2005

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M. Salathe; A. Scherer; S. Bonhoeffer : Neutral drift and polymorphism in gene-for-gene systems; Ecology Letters. 2005. DOI : 10.1111/j.1461-0248.2005.00794.x.
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M. Salathé; R. M. May; S. Bonhoeffer : The evolution of network topology by selective removal; Journal of the Royal Society, Interface / the Royal Society. 2005. DOI : 10.1098/rsif.2005.0072.